| Heat 4. | Team | Time | pl. | | 1. Daniel Kowalski | AUS | 15:19.31 | 4. | | 2. Emiliano Brembilla | ITA | 15:19.36 | 5. | | 3. Tyler Painter | USA | 15:20.18 | 8. | | 4. Masato Hirano | JPN | 15:28.79 | 10. | | 5. Marco Formentini | ITA | 15:29.22 | 11. | | 6. Sergi Roure | ESP | 15:41.36 | 13. | | 7. Scott Cameron | NZL | 15:57.90 | 18. | | 8. Mark Kwok | HKG | 16:03.96 | 20. |
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| Heat 3. | Team | Time | pl. | | 1. Grant Hackett | AUS | 15:19.38 | 6. | | 2. Ian Wilson | GBR | 15:23.72 | 9. | | 3. Graeme Smith | GBR | 15:35.71 | 12. | | 4. Torlarp Sethsothorn | THA | 15:42.78 | 14. | | 5. Tim Siciliano | USA | 15:49.09 | 16. | | 6. Evgueni Bezroutchenko | RUS | 15:57.75 | 17. | | 7. Jure Bucar | SLO | 16:03.77 | 19. | | -. Tom Stoltz | LUX | DNS | |
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